PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G223100.1.p

Common Name

PRUPE_ppa010480mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 249aa MW: 26876.2 Da PI: 9.7175

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G223100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62	1.6e-19	24	98	23	97
DUF260 23 paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 p + ++++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+ Prupe.6G223100.1.p 24 PRSPSHATVFVAKFFGRAGLMSFISAVPDSQRPVLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLR 98 45556999*************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	12.942	1	102	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-15	26	96	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MPSSPKGLQR ILHAPPLPPV DRNPRSPSHA TVFVAKFFGR AGLMSFISAV PDSQRPVLFQ 60 SLLFEACGRT VNPVNGAVGL LWTGNWHVCQ AAVETVLRGG TLRPIPELLG GGSTSDEASD 120 ADGGGVNNCT DMWRLRDPSH NSGSSSRFTS SRSARVSSPK RKRSADEESS TKVLQLQHHA 180 DLDLRLTPSP TFKAKPKPET RRAGTPSMNS EESVVTTCFE SGLPDNHHQY NQHSYGVGAE 240 RKLLNLFP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppe.14389	1e-98	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G223100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007205779.2	1e-162	LOW QUALITY PROTEIN: LOB domain-containing protein 38
Swissprot	Q9SN23	8e-64	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	M5WCH6	0.0	M5WCH6_PRUPE; Uncharacterized protein
STRING	EMJ06978	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-59	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Prupe.6G223100.1.p
Entrez Gene	18772176