PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G243000.2.p
Common NamePRUPE_ppa007903mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 350aa    MW: 39828.1 Da    PI: 6.6864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G243000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185e-0690113226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k  lC f+ + G+C  G +CkF+H+
  Prupe.6G243000.2.p  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                         6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.6E-488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06588115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003563.4155192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.244155193IPR000571Zinc finger, CCCH-type
PfamPF165431.3E-17212291IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPQSD PSKTAAKKKK  60
EEDKAKDKEL NELFKVAVSQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKH TMEEWDQETL EKVVESKKNE YQQNKPTDIV CKYFLEAVEK KQYGWFWVCP  180
NGGKNCHYRH ALPPGYVLKS QMKALLEEEA EKIPIEEEIE NQRAKVTTST PMTTELFMQW  240
KKKKMAERDA GLAAEMAERA KNDRMSGREL FLSDSSLFVD DVEAHEKYQR DQEPPVAEQK  300
VSANSNRDRL GGGAKVTNDD DDDELDIDEL NELEASLSKV TIQEPDTAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G243000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205459.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-171C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A251NV480.0A0A251NV48_PRUPE; Uncharacterized protein
STRINGEMJ066580.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-155C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]