PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G253200.1.p
Common NamePRUPE_ppa021369mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 300aa    MW: 33243.3 Da    PI: 6.5157
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G253200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.13.4e-1968148371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         + +Lr+++ k   ++   e+ g++t+ e a+ ++se               + kn+ RR+YD+lNVLeal++i++  k+ei+w+g
  Prupe.6G253200.1.p  68 GGGLRQFSAK---VCDLLESkGRTTYAELADYIMSElagndsetatslsefNDKNIPRRVYDALNVLEALDIITR-VKKEIKWNG 148
                         679*******...77776666******************************999*********************.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3064153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-2066148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.8E-1869148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.22E-1669149IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.63E-38152255IPR014889Transcription factor DP, C-terminal
SMARTSM011385.8E-35154292IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.23E-35155288No hitNo description
PfamPF087815.6E-28156272IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDDNYSGDSL GGFFQKHSSA ESSVSASLNN AAAFGSARRS ITFDHDDTGT ASVETNAPKK  60
KRVSRMTGGG LRQFSAKVCD LLESKGRTTY AELADYIMSE LAGNDSETAT SLSEFNDKNI  120
PRRVYDALNV LEALDIITRV KKEIKWNGIP DRKMDLEGMK AECVRMMNRI GRKTAYLKDL  180
EEQFADLQNL MFCNKELLKS GNTHPGGFSL PFILVQTSRD AAVEIEISED KHMVHFDFNS  240
APFFLHDDTY ILKLLRRHQR PERTNVSQNS SVHPPSPCPS IVSGGAGPFY WNSGTETPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2268150990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G253200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208610.10.0transcription factor-like protein DPA
SwissprotQ9FNY26e-70DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM5W7W90.0M5W7W9_PRUPE; Uncharacterized protein
STRINGEMJ098090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.18e-72Transcription factor DP