PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G253200.2.p
Common NamePRUPE_ppa021369mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 228aa    MW: 25362.7 Da    PI: 6.7741
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G253200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.92e-1968148371
             E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         + +Lr+++ k   ++   e+ g++t+ e a+ ++se               + kn+ RR+YD+lNVLeal++i++  k+ei+w+g
  Prupe.6G253200.2.p  68 GGGLRQFSAK---VCDLLESkGRTTYAELADYIMSElagndsetatslsefNDKNIPRRVYDALNVLEALDIITR-VKKEIKWNG 148
                         679*******...77776666******************************999*********************.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-3064153IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-2066148IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.0E-1869148IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.98E-1769149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440741.86E-13155216No hitNo description
PfamPF087812.1E-9156216IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDDNYSGDSL GGFFQKHSSA ESSVSASLNN AAAFGSARRS ITFDHDDTGT ASVETNAPKK  60
KRVSRMTGGG LRQFSAKVCD LLESKGRTTY AELADYIMSE LAGNDSETAT SLSEFNDKNI  120
PRRVYDALNV LEALDIITRV KKEIKWNGIP DRKMDLEGMK AECVRMMNRI GRKTAYLKDL  180
EEQFADLQNL MFCNKELLKS GNTHPGGFSL PFILVQVYYF VIFCWFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-2368150990PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G253200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208610.11e-159transcription factor-like protein DPA
SwissprotQ9FNY26e-49DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A251NVP21e-169A0A251NVP2_PRUPE; Uncharacterized protein
STRINGEMJ098091e-158(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.18e-51Transcription factor DP