PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G256300.1.p
Common NamePRUPE_ppa007056mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 385aa    MW: 41338.8 Da    PI: 9.6722
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G256300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.22.4e-4381158178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+
  Prupe.6G256300.1.p  81 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPMVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 158
                         6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.6E-3575143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.36879156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-4180161IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3282155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTIMEMGSSS MTDSGSSSSS SPPNSSTESL NGLKFGRKIY FEDAGLGAAY KSGSAGSSSS  60
GATPPKKQRG VNLAQSGQPP RCQVEGCQVD LSDAKAYYSR HKVCGLHSKT PMVIVAGLEQ  120
RFCQQCSRFH QLPEFDQGKR SCRRRLAGHN ERRRKPQPGS ILSARFGRLS SSIYENSSRV  180
GSFLMDFTAY PRLSGRDAWA TTRTSERVPG NQNSNDTGKF LQHPWQSNSE ITPSGLYLQG  240
SAGRSNYPGP GIPPGECVTG VTDSSCALSL LSSQPWGSRN RVSGVGMNTV INTQGPPVGQ  300
PITHAGTANH FPTTSWGFKG NEAGSSSHEM LPDLGLGQIS QPPLSTQYSG VLELSQQSSR  360
RQQQMELGHT RGYDTSSQHI HWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-30821551184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G256300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205341.10.0squamosa promoter-binding-like protein 9
TrEMBLM5WIB20.0M5WIB2_PRUPE; Uncharacterized protein
STRINGEMJ065400.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.18e-68squamosa promoter binding protein-like 9