PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G257000.3.p
Common NamePRUPE_ppa001883mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 660aa    MW: 73932.5 Da    PI: 7.5666
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G257000.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3802.9e-1162866571374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla++++ +L+arla+++s+++kal +++ts    ++ l+a++l+  +sP+ 
  Prupe.6G257000.3.p 286 LRTLLISCAQAVAADDHRSANELLKKVRQHSSPFGDGTQRLAHCLADGLEARLAGTGSQICKALVSKRTS---AADFLKAYHLYLAASPFK 373
                         6789*************************************************************99999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         k+s+++ N++I++ +++++rvH+iDf+i +G+QWp+L+q ++ R++gpp+lRiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+
  Prupe.6G257000.3.p 374 KISNFVSNKTIMNLAQNATRVHVIDFGILYGFQWPTLIQRISWRDGGPPRLRITGIEFPQPGfrPAERVEETGRRLAAYAEKFNVPFEYNA 464
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +ak++++++leeL+++++E+l+Vn+ ++ ++lldesv+++s+rd+vL+l+++++P+++++   +   n++ F++rf eal ++s+lfd+l
  Prupe.6G257000.3.p 465 -IAKNWDTIKLEELKIDRDEVLVVNFLYRGKNLLDESVAVDSPRDRVLDLIRRINPDLFIHGIVNGAFNAPFFVTRFREALFHFSSLFDML 554
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         e+ +pre++er+ +E e++gre+ nv+aceg er+er et+++W+ r  +aGF ++pl+   +k a   +r  + + + ++e+s +l++gW
  Prupe.6G257000.3.p 555 ETVVPREDRERMLIETEIFGREALNVIACEGWERVERPETYKQWQVRNLRAGFVQLPLDRGLVKRAGEKVRSGYHKDFVIDEDSRWLLQGW 645
                         ************************************************************************99888************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r+++++S W+
  Prupe.6G257000.3.p 646 KGRTVYALSTWK 657
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.713260637IPR005202Transcription factor GRAS
PfamPF035141.0E-113286657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MLMEEDMEDK TCMLQESLEL QAAEKSFYEV LGKKYPPSPE LHQDYAIQYG ESPGDSFSGT  60
RSNYITSTCN SGGYFGDNTL IQSPDGHLAQ LKGLPAYSIS QSRYGSSTRV SSLDGQVDSP  120
SSLHMPDLNT ESQSVWQFKK GVEEASRFLP GETKLVVNLE ANGLSAQAPK VGTNGEVVKV  180
EKKDEGEYSP SGSRGRKNLY REDDDVEESR RSKQAAVSTE SILRSELFDT VLLCSTGEGL  240
ERLESLREAL QNGMSKSMPQ NGQSKGSNGG KGRGKKQTGK KEVVDLRTLL ISCAQAVAAD  300
DHRSANELLK KVRQHSSPFG DGTQRLAHCL ADGLEARLAG TGSQICKALV SKRTSAADFL  360
KAYHLYLAAS PFKKISNFVS NKTIMNLAQN ATRVHVIDFG ILYGFQWPTL IQRISWRDGG  420
PPRLRITGIE FPQPGFRPAE RVEETGRRLA AYAEKFNVPF EYNAIAKNWD TIKLEELKID  480
RDEVLVVNFL YRGKNLLDES VAVDSPRDRV LDLIRRINPD LFIHGIVNGA FNAPFFVTRF  540
REALFHFSSL FDMLETVVPR EDRERMLIET EIFGREALNV IACEGWERVE RPETYKQWQV  600
RNLRAGFVQL PLDRGLVKRA GEKVRSGYHK DFVIDEDSRW LLQGWKGRTV YALSTWKPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-472696581379Protein SCARECROW
5b3h_D4e-472696581379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G257000.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818413e-32LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132583e-32LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207215.20.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A251NVX50.0A0A251NVX5_PRUPE; Uncharacterized protein
STRINGEMJ084140.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein