PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G263900.2.p
Common NamePRUPE_ppa002604mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 654aa    MW: 72447.3 Da    PI: 7.1403
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G263900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-094454821954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Prupe.6G263900.2.p 445 FEHflHPYPTDSDKLMLAKQTGLSRSQVSNWFINARVR 482
                         554459******************************88 PP
2BELL108.73.6e-35314382472
                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         e ++kk++L+s+l+eV++rYkqy++q+q+v+ sFe vaglg+a+pY++lA ka++rhF+cLk+ai++q+
  Prupe.6G263900.2.p 314 ESRRKKSRLISMLDEVYRRYKQYYQQMQAVVTSFEYVAGLGNAAPYANLAIKAMTRHFKCLKNAITDQL 382
                         7899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-53242380IPR006563POX domain
PfamPF075261.0E-39247379IPR006563POX domain
PROSITE profilePS5007112.179423486IPR001356Homeobox domain
SMARTSM003891.1E-10426490IPR001356Homeobox domain
CDDcd000863.67E-13426487No hitNo description
SuperFamilySSF466896.42E-17428492IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-27429490IPR009057Homeodomain-like
PfamPF059201.2E-18443482IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRREKLR VLAGQAHPGC LQPDSPPPPH HHLHPGNCAA SGFLPLPYDP  60
SSSFIASSDL LTCEPTPASP VKPEGQVHHH HHHHHPLMGF VSNSSSSSSA STFRNHLNYL  120
DPQPSSINFP INPTSIHDIN ANPFLYPPQN LQTLRDFDHQ ADYGHDQVVV FKPEPLSLSL  180
SSSQPPHHHT HQNNNNNNNN NNLQRYGASA VNYSSLNSGV NVASASNENI GSRSSVPLGP  240
FTGYASILKG SRFLKPAQQL LEEFCEVGNR EIYTAKVLAD SSSFFDPPSI ESFSPTHVVD  300
DDDDPLSVEG DGGESRRKKS RLISMLDEVY RRYKQYYQQM QAVVTSFEYV AGLGNAAPYA  360
NLAIKAMTRH FKCLKNAITD QLQFRNRDAT QLSHGKDESQ LLRNTRGFYN QRSIHNSDFV  420
EHQPVWRPQR GLPERAVTVL RAWLFEHFLH PYPTDSDKLM LAKQTGLSRS QVSNWFINAR  480
VRLWKPMVEE IHTLETRQAQ KTSQRGDQSA NRSIDDHLPS PNSLASENPS TTTHRVQDSL  540
SKRTRNELPD HITMGSSADQ LNLSCNNLPS HLHVGHVGMN MAGGSSSGVS LTLGLHQNNG  600
IGLSEPFPIN AAQRFGLGLD GNNDGYAMGG FDSQNRHFGR DVMGGQLLHD FVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15432490563Homeobox protein Meis2
3k2a_B1e-15432490563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during late heart stage embryo in the SAM region between the two developing cotyledons. Expression is initially down-regulated in incipient floral primordia but a strong expression is subsequently detected in the central region of young floral primordia and the inner whorl of developing flowers. In fruit, is expressed in the replum of developing ovaries. {ECO:0000269|PubMed:12874117}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in stems, inflorescences and flowers. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G263900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208167.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-116BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLM5W7S40.0M5W7S4_PRUPE; Uncharacterized protein
STRINGEMJ093660.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-91TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]