PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G271600.1.p
Common NamePRUPE_ppa009103mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 307aa    MW: 34662.5 Da    PI: 8.8072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G271600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-082872345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         WT+eE +++ +a +++ ++   +W ++a++++ g+t  +++  + 
  Prupe.6G271600.1.p 28 EWTAEENKQFENALALYDKDtpdRWFKVAARIP-GKTVGDVIKQYK 72
                        6********************************.****99988775 PP
2Myb_DNA-binding47.25.1e-15135179347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  Prupe.6G271600.1.p 135 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 179
                         8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4722479IPR017884SANT domain
SMARTSM007171.2E-102577IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-112781IPR009057Homeodomain-like
PfamPF002494.1E-72872IPR001005SANT/Myb domain
CDDcd001675.18E-82874No hitNo description
PROSITE profilePS5129420.486128184IPR017930Myb domain
SuperFamilySSF466891.94E-17130183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-17131183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.7E-13132179IPR009057Homeodomain-like
SMARTSM007172.1E-13132182IPR001005SANT/Myb domain
PfamPF002492.0E-12135179IPR001005SANT/Myb domain
CDDcd001676.55E-11135180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MYRGIGILSP TSYLENSNWL FQESNGTEWT AEENKQFENA LALYDKDTPD RWFKVAARIP  60
GKTVGDVIKQ YKELEEDVSD IEAGLIPIPG YTSNSFTLEW VNNQGFDGLK QFYGVGGKRG  120
TSTRPADQER KKGVPWTEEE HRQFLMGLKK YGKGDWRNIS RNFVTTRTPT QVASHAQKYF  180
IRQLTGGKDK RRSSIHDITT VNLQDNKPPS PDSKSPPSSD HSSTVVQSQQ HQKVTGMSEQ  240
QFDWKSPNEG QPMVFNSANG STMGPFCGIS SYVPKLEEQN FLSGNLHGSQ LGHYNARFQM  300
QSMRYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-162593775RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G271600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2461630.0GQ246163.1 Malus x domestica cultivar Jiangsu Fuji MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205616.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-120DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM5WJ300.0M5WJ30_PRUPE; Uncharacterized protein
STRINGEMJ068150.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-121MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]