PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G303900.1.p
Common NamePRUPE_ppa022799mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 244aa    MW: 27808 Da    PI: 10.1635
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G303900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.6e-161154346
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                        i n+s r+ tf kR+ g++KK +ELS+LCd+ ++ +i+s+   l
  Prupe.6G303900.1.p 11 IANDSTRKATFKKRKRGLIKKISELSTLCDVPACALIYSQYESL 54
                        89*************************************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.156150IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-23160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-23295IPR002100Transcription factor, MADS-box
CDDcd002669.92E-32283No hitNo description
PRINTSPR004041.8E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-151151IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTRKKVKLAY IANDSTRKAT FKKRKRGLIK KISELSTLCD VPACALIYSQ YESLPDIWPS  60
PSGVQRVIAQ FRNMPEMEQG RKMFNQETFL RQRIVKSHEQ LKRLRKENRE KEVSRVMFQT  120
LTGRPLQGLN MIDLNDLGWL IDQNVKELGE KIKSKREELL AQRNEVTMAA PNAAALPARA  180
GDHGMDLNMQ QPAMENTMQR PPWFSDVMTP QEPMGSGAAG GDEVLPFGDQ NHPAFWHNSP  240
FFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAYIANDSTRKATFKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G303900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007207095.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-55AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM5W3J80.0M5W3J8_PRUPE; Uncharacterized protein
STRINGEMJ082940.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-57AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]