PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G343400.2.p
Common NamePRUPE_ppa008172mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 310aa    MW: 32254.2 Da    PI: 5.1812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G343400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10158202554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Prupe.6G343400.2.p 158 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 202
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.46E-11151207No hitNo description
SuperFamilySSF474591.05E-15151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-16155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAGNPPEGLG DDFFEQILAV PPSYSTGGAD SAGGGYGDVG SMPMVLQLGS GGSSSAGGGG  60
GGGSGGGGYR GVGMGMGMPL GLNLEQGGFI GQERFRELRE EVEANTNNNI NTPNVSASVS  120
SAMNFHSQPS PGPVAAVHHP PAIRPRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV  180
PSCNKTDRAA MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV AQLVADVPLS AVEGEGIEGG  240
TNQQAWEKWS NDGTEQQVAK LMEEDVGAAM QFLQAKALCI MPISLAPAIF RTHQPDATTL  300
VKPESNSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.3970.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G343400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272182e-35AB627218.1 Malus x domestica mRNA, microsatellite: MEST049, clone: FLW01_46_C11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205486.10.0transcription factor UNE12 isoform X2
SwissprotO227681e-90UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A251NZU90.0A0A251NZU9_PRUPE; Uncharacterized protein
STRINGEMJ066850.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]