PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G013500.1.p
Common NamePRUPE_ppa014111mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 87aa    MW: 9351.73 Da    PI: 6.4832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G013500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-073161427
                        --TTTTT-SS-SSS CS
             zf-CCCH 14 tCkyGdrCkFaHgp 27
                        +Ck+G++CkF+H++
  Prupe.7G013500.1.p  3 QCKFGATCKFHHPK 16
                        5***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006422.8E-4316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MWQCKFGATC KFHHPKDILI PSAEQENTFG ETGTTIQPEG TGFAVKPPVS FIPALSFNSK  60
GLPVRPGEPD CPFYLIGSCM YGATWA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G013500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202806.17e-59zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-22C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLM5WB332e-57M5WB33_PRUPE; Uncharacterized protein
STRINGEMJ040053e-58(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-25floral homeotic protein (HUA1)