PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G016600.1.p
Common NamePRUPE_ppa026303mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 275aa    MW: 29635.1 Da    PI: 6.6311
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G016600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.43.3e-152383257
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        r+R+ +++eq+ +Le+ F++   +p +ee  ++ k l     + +++V++WFqNrR + ++
  Prupe.7G016600.1.p 23 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgTVGDANVFYWFQNRRSRSRR 83
                        89*****************99*************************************997 PP
2Wus_type_Homeobox104.66.4e-342285265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  Prupe.7G016600.1.p 22 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 85
                        589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.1911984IPR001356Homeobox domain
SuperFamilySSF466897.7E-141990IPR009057Homeodomain-like
SMARTSM003893.6E-62188IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-82288IPR009057Homeodomain-like
PfamPF000465.1E-132383IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDKGQDPNS PGNGSERSSE PVRSRWIPKP EQILILESIF NSGMVNPPKE ETVRIRKLLE  60
KFGTVGDANV FYWFQNRRSR SRRRQRQLQA SLEQRNNNTK SNQVGDHQMG ISSGAIQYEI  120
SCSPPAPAPA MAFGASPTSF GSCNYLVGSS SSSSSGHHLM ADHDQQTSSS VDPFFSVSGQ  180
MGFPEIEQGS GVTSVLGGGP SDTSTLHFQS GLITVFINGV PAEVPKGPLD MKSMFGQDVL  240
LVHSSGLPLP LNEFGFLAHG LQPGESYFLV SRTT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G016600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203525.10.0WUSCHEL-related homeobox 11
SwissprotQ6X7J31e-71WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLM5VTQ20.0M5VTQ2_PRUPE; Uncharacterized protein
STRINGEMJ047240.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-68WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]