PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G030200.1.p
Common NamePRUPE_ppa013383mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 127aa    MW: 14849 Da    PI: 9.9213
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G030200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.33.6e-171250341
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        i n++ r+ tf kR++ i KKA ELS LCd++v++ii+ 
  Prupe.7G030200.1.p 12 IPNEIARKMTFRKRKKSIYKKADELSKLCDIDVCLIIYE 50
                        889**********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.572249IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-8261IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-10424IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-17485IPR002100Transcription factor, MADS-box
CDDcd001203.14E-15549No hitNo description
PfamPF003196.1E-161251IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-102439IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-103960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MPPRARRSVE LIPNEIARKM TFRKRKKSIY KKADELSKLC DIDVCLIIYE ADPKKGRAIQ  60
SETWPQDSAE FNGIFNKYKA SKDIHVPGLK QNFNLSDFYN AAKKEDVDRK FKKLYPTWDD  120
RIDEFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G030200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424478.11e-88agamous-like MADS-box protein AGL82
TrEMBLM5WAY02e-87M5WAY0_PRUPE; Uncharacterized protein
STRINGEMJ039554e-88(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-15M-type_MADS family protein