PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G030800.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 262aa    MW: 30292.7 Da    PI: 8.5653
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G030800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-164990344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i n+  r+ tf kR++ i KKA ELS LCd++v++i++  ++
  Prupe.7G030800.2.p 49 IPNEGTRKMTFRKRKKSIYKKADELSKLCDIDVCLIVYEADQ 90
                        779999*******************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-83998IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.8723999IPR002100Transcription factor, MADS-box
CDDcd001203.10E-164086No hitNo description
PRINTSPR004041.2E-74161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1643121IPR002100Transcription factor, MADS-box
PfamPF003192.3E-154991IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-76176IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-77697IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MISSSILAPK EVFLAPWLCT LGKGMFQLCT SLFFAKDMVA PQRRSLELIP NEGTRKMTFR  60
KRKKSIYKKA DELSKLCDID VCLIVYEADQ KKGRAVQPET WPRDPTQFKR ILNKYKDSKD  120
MPAPGLKRNF DMSDFYEDKK DHMDNDDEKF QNLGKNPTKF QNLGKKISEE EYPTWNDRID  180
DFSQDELTKL IASLESKIQV ATKKIDSMER YMGFAKTQNQ SLVREETNHD EQPAYQVPAL  240
MSPPSLVHYP MLPSAWVSRS E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G030800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423472.11e-167agamous-like MADS-box protein AGL82
RefseqXP_020423473.11e-167agamous-like MADS-box protein AGL82
TrEMBLA0A251N6180.0A0A251N618_PRUPE; Uncharacterized protein
STRINGXP_008240673.11e-148(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-22M-type_MADS family protein