PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G030800.3.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 225aa    MW: 26215.8 Da    PI: 8.6
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G030800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.92e-161253344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i n+  r+ tf kR++ i KKA ELS LCd++v++i++  ++
  Prupe.7G030800.3.p 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCDIDVCLIVYEADQ 53
                        779999*******************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-8261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.872262IPR002100Transcription factor, MADS-box
CDDcd001202.11E-16349No hitNo description
PRINTSPR004048.2E-8424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-16684IPR002100Transcription factor, MADS-box
PfamPF003191.8E-151254IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-82439IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-83960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVAPQRRSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC DIDVCLIVYE ADQKKGRAVQ  60
PETWPRDPTQ FKRILNKYKD SKDMPAPGLK RNFDMSDFYE DKKDHMDNDD EKFQNLGKNP  120
TKFQNLGKKI SEEEYPTWND RIDDFSQDEL TKLIASLESK IQVATKKIDS MERYMGFAKT  180
QNQSLVREET NHDEQPAYQV PALMSPPSLV HYPMLPSAWV SRSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G030800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423472.11e-167agamous-like MADS-box protein AGL82
RefseqXP_020423473.11e-167agamous-like MADS-box protein AGL82
TrEMBLA0A251N6511e-166A0A251N651_PRUPE; Uncharacterized protein
STRINGXP_008240673.11e-149(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-22M-type_MADS family protein