PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G031500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 252aa    MW: 28269.9 Da    PI: 7.5385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G031500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-1381127354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs +++Lr llP +      K +Ka+ L k+v+ +k+L
  Prupe.7G031500.1.p  81 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 127
                         58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.44778127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1081127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-1181130No hitNo description
SuperFamilySSF474592.22E-1482142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1482136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-1284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.80E-4166230No hitNo description
Gene3DG3DSA:3.30.70.2602.3E-5166232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MQPADHQNQE LYRFLAQNGL INMNNNNGSY VGFPGGASCD QFSAMQSFCS SSSYNYYPLE  60
VSGVSTEHET SPQDRALAAL KNHKEAEKRR RERINSHLDK LRGLLPCNSK TDKASLLAKV  120
VQRVKELKQQ TSELTELESF PSETDEITVL SSDDYSSDGR IIFKASLCCE DRTDLLPDLI  180
EILKSLHLKT LRAEMATLGG RIRNVLIVAA DKDHTIESVH FLQNALKSLL ERSNASERSK  240
RRRVLDRTLV L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239243KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G031500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894240.0KP689424.1 Prunus pseudocerasus isolate Unigene8039 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202577.20.0transcription factor bHLH106
SwissprotO806742e-90BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A251N6530.0A0A251N653_PRUPE; Uncharacterized protein
STRINGXP_008240669.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-87bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]