PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G031800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 27270 Da    PI: 8.7179
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G031800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-161254345
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        i n+  r+ tf kR++ i KKA ELS LC+++v++i+++ ++k
  Prupe.7G031800.1.p 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYAADQK 54
                        779999*********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.591262IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-8261IPR002100Transcription factor, MADS-box
CDDcd001203.00E-15355No hitNo description
PRINTSPR004041.2E-6424IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-16786IPR002100Transcription factor, MADS-box
PfamPF003193.0E-151254IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-62439IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-63960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVAPRRTCLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYA ADQKKGRAVQ  60
PETWPRDPNQ FKRILNKYKD SKDTSTPRLK RNFIMSDFYE DKKDHVDEDD EKFQNLGKKI  120
FEGEYPTKFQ NLGKKISEEE YPRWDDRIDD FSQDELTELI ASLESKIQVA TKRIDSMERY  180
MGFAKKQNQS LVREETNHDE QPYQVPALMS PPSLVHYPML PSAWVSSSES AKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G031800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203683.21e-174agamous-like MADS-box protein AGL82
TrEMBLA0A251N6361e-173A0A251N636_PRUPE; Uncharacterized protein
STRINGXP_008240673.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-22M-type_MADS family protein