PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G032000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 208aa    MW: 24446.7 Da    PI: 6.561
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G032000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.4e-161253344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i n+  r+ tf kR++ i KKA ELS LC+++v++i++  ++
  Prupe.7G032000.1.p 12 IPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQ 53
                        779999*******************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.661262IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-7261IPR002100Transcription factor, MADS-box
CDDcd001201.94E-15349No hitNo description
PRINTSPR004045.2E-7424IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-16685IPR002100Transcription factor, MADS-box
PfamPF003192.0E-151254IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-72439IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-73960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVAPRRSSLE LIPNEGTRKM TFRKRKKSIY KKADELSKLC GIDVCLIVYE ADQKKGRAVQ  60
PETWPRDPTQ FKRILNKYKD SKDTSTPGLK RNFDMSDFYE DKKDHVDEDD EKFQNLGERI  120
FEGEYPTKFQ NLGKKIFEEE YPTWDDRIDD FSKDELTELI ASLESKIQVA TKKIDCMERY  180
MGFAKKQNQS LVREEINHDE QPIKSLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G032000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424421.11e-152agamous-like MADS-box protein AGL82
TrEMBLA0A251N9961e-151A0A251N996_PRUPE; Uncharacterized protein
STRINGXP_008240673.11e-134(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14708511
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-22M-type_MADS family protein