PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G039600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 572aa    MW: 64622.5 Da    PI: 4.8863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G039600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.11.1e-1117108199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                         ffk+      +++ r+ +p +f+ ++g++   s  + l+ ++g ++e++l  r++ ++ +++ kGW eF k   L+ g  +vF ++g+s+f
  Prupe.7G039600.1.p  17 FFKII--LEDSSKIRIKIPMRFLMKYGEN--LSSPVHLKLPNGAEMEIEL--RRCNNGgVWFDKGWPEFSKFCSLDYGSWLVFGYEGNSNF 101
                         56666..56677788***********977..566799999**********..55555559***************************9999 PP

                         ..EEEEE-S CS
                  B3  91 elvvkvfrk 99 
                           +v +f++
  Prupe.7G039600.1.p 102 --HVLIFDR 108
                         ..*****98 PP
2B352.87.5e-17279371499
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                         v +++ + k++ l +p  fa++h ++++ +  + l+ ++gr+W+vk++y+k+  r  ++ GW +Fv++n+L++ D++vF+l+++ + ++ v
  Prupe.7G039600.1.p 279 VVMQPWYVKQSFLPMPSGFAKRHLIEHPAG-NVFLRVSDGRTWSVKFKYEKSVAR--FQYGWLGFVRDNNLEADDVCVFSLIEDVKLSFDV 366
                         44566666666799*********4444444.7***************77777665..89***********************998888888 PP

                         EEE-S CS
                  B3  95 kvfrk 99 
                          +fr+
  Prupe.7G039600.1.p 367 VFFRT 371
                         88876 PP
3B346.56.4e-15423506594
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++++ ++  ++lp kf +   ++k  s +++l+ ++gr+W+v l  +k++    +++GW + v++n+L++gD ++F l+++++ ++++
  Prupe.7G039600.1.p 423 SIRPSYINHWSMWLPSKFYKLSPSIK-HSCEVILQVSNGRTWSVGL--SKGR--PRFRRGWMDVVRDNHLEVGDLCLFVLISSKS-TPLF 506
                         45667777778********7775555.4569***************..6665..559***********************98544.4544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.69E-1910108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1811109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.23E-1315107No hitNo description
PROSITE profilePS5086310.37715109IPR003340B3 DNA binding domain
SMARTSM010193.0E-717109IPR003340B3 DNA binding domain
PfamPF023628.0E-917108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-22270370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-21271370IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-21275370No hitNo description
PROSITE profilePS5086313.747276372IPR003340B3 DNA binding domain
SMARTSM010194.5E-11277372IPR003340B3 DNA binding domain
PfamPF023628.8E-15279370IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-18412512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-18415508IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-19418512No hitNo description
PROSITE profilePS5086312.379419514IPR003340B3 DNA binding domain
SMARTSM010192.5E-8420514IPR003340B3 DNA binding domain
PfamPF023623.5E-13422506IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MASLHDPPTF SASIPHFFKI ILEDSSKIRI KIPMRFLMKY GENLSSPVHL KLPNGAEMEI  60
ELRRCNNGGV WFDKGWPEFS KFCSLDYGSW LVFGYEGNSN FHVLIFDRTA TEIEYPKPEM  120
EETDSEEEEE EQDDADDGSV EILDVSEEEE QQDDADDGSV EILDVSEEEE QQDDADDESV  180
ENLDVFPPCP RKAREKSPLP CPQPHKKMRT RSSGMMLEES LSNKASYCSK SEMKREKSPL  240
VPSEVKDGVG RMHISTTSGK AIALQRAIAF KSVNPSFRVV MQPWYVKQSF LPMPSGFAKR  300
HLIEHPAGNV FLRVSDGRTW SVKFKYEKSV ARFQYGWLGF VRDNNLEADD VCVFSLIEDV  360
KLSFDVVFFR TTEEAANCLL SPGRHDFPTK KDGGGTSSNR TGKATALDRA NAFRSQNPSF  420
IVSIRPSYIN HWSMWLPSKF YKLSPSIKHS CEVILQVSNG RTWSVGLSKG RPRFRRGWMD  480
VVRDNHLEVG DLCLFVLISS KSTPLFDLVI FRSGEGAKCT NDGEQIVPTK EETDNEDGDS  540
SDDSSNDSSD DSVEIMDKFP PPRKTRVVKR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1425037322144B3 domain-containing transcription factor VRN1
4i1k_B4e-1425037322144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.45710.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G039600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423288.10.0B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A251N6F10.0A0A251N6F1_PRUPE; Uncharacterized protein
STRINGEMJ044820.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-19B3 family protein