PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G044500.1.p
Common NamePRUPE_ppa019889mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 179aa    MW: 20900.2 Da    PI: 9.9344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G044500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51e-1789169588
                         -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          +p+ +  +g l lp kfa++h  +++++   ++l+ ++gr+W v+++y+ +     +++GW  F+++n+Lk+gD++vF l++ +
  Prupe.7G044500.1.p  89 AIPPVYIHRGYLHLPSKFARRHlVKQPAR--NIILKILDGRTWLVEFKYETSI--ARFQRGWLAFARDNNLKVGDMCVFVLIDCN 169
                         56777888999***********7555555..69999999********555554..669**********************98633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.02155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-2178176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2279174IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-2085178No hitNo description
PROSITE profilePS5086314.35385178IPR003340B3 DNA binding domain
SMARTSM010199.3E-1186176IPR003340B3 DNA binding domain
PfamPF023625.1E-1687170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEIELRRSKD GWVWFDKGWP EFSKLCSLDY GENDMPTKKD FGGSSSNQIF VKRTPDVLGR  60
THPLTKSEKA LALQRANAFK SEYPYFLVAI PPVYIHRGYL HLPSKFARRH LVKQPARNII  120
LKILDGRTWL VEFKYETSIA RFQRGWLAFA RDNNLKVGDM CVFVLIDCNE RLFEVFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-145917822140B3 domain-containing transcription factor VRN1
4i1k_B3e-145917822140B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G044500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424180.11e-106B3 domain-containing transcription factor VRN1 isoform X3
TrEMBLM5WCL71e-130M5WCL7_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ045151e-131(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-17related to vernalization1 1