PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G044800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 455aa    MW: 52277.8 Da    PI: 8.5999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G044800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-11221061099
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++k+ r+ +p kf+ ++g++   s  + l+ +sg ++e++l+ r ++g++++ kGW eF k   L+ g ++vF ++g+s+f   v +f+k
  Prupe.7G044800.1.p  22 TSKKTRIKIPMKFLMRYGEN--LSSPVHLKLPSGVEMEIELR-RSNDGWVWFDKGWPEFSKLCSLDYGNSLVFGYEGNSNF--SVFIFDK 106
                         567789***********977..6667***************3.666677****************************9999..7777776 PP
2B354.22.6e-17196276689
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         +++ +  +g l lp kfa++h ++k++ + ++l+ ++gr+W v+++y+ +     +++GW  F+++n+Lk+gD++vF l++ +e
  Prupe.7G044800.1.p 196 IQPVYIHRGYLHLPSKFARRH-LVKKRARNIILKILDGRTWLVEFKYETSI--ARFQRGWLAFARDNNLKVGDVCVFVLIDCNE 276
                         5566677899***********.44556779***************555554..669**********************986333 PP
3B351.51.8e-163734531598
                         -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         +l +p +fa+++ +k  +++t+tl+  + rsW v+li   k ++  l++GW eFv +n L egD+++F+l++r++  l+v++fr
  Prupe.7G044800.1.p 373 ILHVPVTFARSFVKK--RKQTVTLQV-RERSWPVNLIGHTKESGAKLSGGWCEFVTENCLMEGDVCIFELIERNDIVLKVHIFR 453
                         5789*****999755..444677655.78*******9877777899*************************999999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-178107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-179107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-912105No hitNo description
PROSITE profilePS5086311.09613107IPR003340B3 DNA binding domain
SMARTSM010191.2E-514107IPR003340B3 DNA binding domain
PfamPF023628.0E-922106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-22184285IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-23185286IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-20190285No hitNo description
PROSITE profilePS5086314.706191287IPR003340B3 DNA binding domain
SMARTSM010198.7E-15192285IPR003340B3 DNA binding domain
PfamPF023622.9E-15194277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-19356453IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-17357453IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.238359454IPR003340B3 DNA binding domain
CDDcd100179.52E-17361453No hitNo description
SMARTSM010192.1E-10363453IPR003340B3 DNA binding domain
PfamPF023621.1E-14374453IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MASLQDSPAS MPHFLRIILD KTSKKTRIKI PMKFLMRYGE NLSSPVHLKL PSGVEMEIEL  60
RRSNDGWVWF DKGWPEFSKL CSLDYGNSLV FGYEGNSNFS VFIFDKTATE IEYPKPEMEE  120
TDSDFEEEED DDDESGHARG EIKRENDMPT KKDFGGSSST RIFLGRTHPL TKSEKALALQ  180
RANAFESEYP YFLVAIQPVY IHRGYLHLPS KFARRHLVKK RARNIILKIL DGRTWLVEFK  240
YETSIARFQR GWLAFARDNN LKVGDVCVFV LIDCNERLFE VFFYRTNDAE DCPLSPGHGG  300
VAIDRVEKRR NPMIKVEIDC TTNYENGKYK RLNTGGQVTQ RPLNSSSRAL EAANRFTPKD  360
PSFRVTLGST RLILHVPVTF ARSFVKKRKQ TVTLQVRERS WPVNLIGHTK ESGAKLSGGW  420
CEFVTENCLM EGDVCIFELI ERNDIVLKVH IFRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1916545322144B3 domain-containing transcription factor VRN1
4i1k_B3e-1916545322144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G044800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3249234e-40AF324923.1 Prunus armeniaca microsatellite ssrPaCITA13 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424179.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A251N6Q10.0A0A251N6Q1_PRUPE; Uncharacterized protein
STRINGXP_008240722.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-22B3 family protein