PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G071500.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 352aa    MW: 39259.7 Da    PI: 8.2477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G071500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13278323655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  Prupe.7G071500.1.p 278 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 323
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16275338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-12276325No hitNo description
Gene3DG3DSA:4.10.280.102.5E-14277332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-10278323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MYNGPPASNS STSPLIQIPQ WQTEQPPFMD SNTHQNLHSQ EHQTHQPNSG LLRFRSAPSS  60
LLANFNENSD LGLIGKNPIE GSESERLFSR FANYTHTNDS DSWPSSFQEL DDKSTVTATE  120
AAVTESRMSS QQQGYSGLPP HYPRQSSFNG SYGLVGSAAM NHHTQPKAVH SNLVRQSSSP  180
AGLFSNCSVQ NGFQFGTWND SSNFAENLGG MRRDQDNDGK LFSVPQNGEL ENRIHLLSHH  240
LSLPKTSAEI AMEKFLQLQD SVPCKVRAKR GCATHPRSIA ERVRRTRISE RMRKLQELVP  300
NMDKQTNTAD MLDLAVEYIK DLQKQFKTLS DVRANCKCLN MQKKPVSNQI V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G071500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424059.10.0transcription factor bHLH130
SwissprotQ66GR31e-103BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A251N7Z80.0A0A251N7Z8_PRUPE; Uncharacterized protein
STRINGXP_008240817.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-102bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]