PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G076300.2.p
Common NamePRUPE_ppa009316mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 226aa    MW: 23478.5 Da    PI: 8.9132
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G076300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-083055227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        k +lC+ +     Ck+Gd+C+FaHg+
  Prupe.7G076300.2.p 30 KSRLCNKYNSAEGCKFGDKCHFAHGE 55
                        6799******99************96 PP
2zf-CCCH38.32.3e-12192216126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC++f + GtC +GdrC+FaHg
  Prupe.7G076300.2.p 192 YKTKLCDNFTK-GTCTFGDRCHFAHG 216
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-132658IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1122856IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-72859IPR000571Zinc finger, CCCH-type
SMARTSM003560.0253055IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-63055IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.101.4E-1796165IPR004088K Homology domain, type 1
SMARTSM003222.6E-1396166IPR004087K Homology domain
PROSITE profilePS5008415.17997161IPR004088K Homology domain, type 1
PfamPF000134.2E-1399163IPR004088K Homology domain, type 1
CDDcd001051.47E-1699161No hitNo description
SuperFamilySSF547913.21E-1699192IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-17187222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-9190221IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-8191217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.755191218IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10192216IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMNLAPAPQA SRNIAPPPSN SNGSSSSAVK SRLCNKYNSA EGCKFGDKCH FAHGEWELGK  60
HLAQSHDDPR AMGPGPGRMT NWMEPPLAGP ASSFGASSTA KISVDASLAG AIIGKGGVNS  120
KQICRQTGAK LSIREHESDP NLRNIELEGT FEQIQQASAM VRELIVTVSM SGPAKTPGGG  180
APGAPAPPGS NYKTKLCDNF TKGTCTFGDR CHFAHGAAEL RKSGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G076300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424246.11e-167zinc finger CCCH domain-containing protein 14 isoform X2
SwissprotQ69XQ36e-83C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A251N8701e-165A0A251N870_PRUPE; Uncharacterized protein
TrEMBLM5W9V31e-164M5W9V3_PRUPE; Uncharacterized protein
STRINGEMJ035751e-165(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-65C3H family protein