PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G082300.1.p
Common NamePRUPE_ppa024710mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 272aa    MW: 29381.2 Da    PI: 4.4595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G082300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-056082123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C+k+Fs+   L  H++ H
  Prupe.7G082300.1.p 60 YSCTSCDKVFSTTQALGGHQNAH 82
                        99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-45986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.35E-65987No hitNo description
PROSITE profilePS5015712.1336087IPR007087Zinc finger, C2H2
PfamPF139122.8E-76085IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MFNPYRSSAQ SSSTAPNLPI TSNNPITPST DSIPIRFPVS PVLGACLSFH TVQSGDSCKY  60
SCTSCDKVFS TTQALGGHQN AHRKERNALF AREQQRSAEE NDRDRDVVLS PDPVRWAYPA  120
GYYYVDAEIM TTTTTSAVNT NNKMCEYEFF HFMGMAGDCN PKQAGFGFGS SSSGGHGGAS  180
GSGTKRPPEG DGDGADQKKK AKYYEEDDDL KVVMPSMNLS LATRCGGDDL IDEIEGSDSD  240
LEWEDGEYIY FNQGGGASTS KTEELDLSLK L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G082300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203500.10.0uncharacterized protein LOC18769515
TrEMBLM5VTM90.0M5VTM9_PRUPE; Uncharacterized protein
STRINGEMJ046990.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1510933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.11e-08C2H2 family protein