PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G091400.1.p
Common NamePRUPE_ppa016038mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 216aa    MW: 23494.6 Da    PI: 10.113
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G091400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.7e-172468145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k+i+ +s  qvtfskRrng++ KA+ L  LC+aeva+++fs++g+
  Prupe.7G091400.1.p 24 KKIQKTSSLQVTFSKRRNGLFRKASQLGALCGAEVAILVFSPHGR 68
                        678999999*********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.2071676IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-251693IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-271675IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-181838IPR002100Transcription factor, MADS-box
PfamPF003191.2E-212572IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-183853IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-185374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSDDSSSTVT KQKSTMGRKK IDIKKIQKTS SLQVTFSKRR NGLFRKASQL GALCGAEVAI  60
LVFSPHGRPF VFGHPSVDSV ISRLASTSTN AECMHTSGDD EDTHSSIVQS NPSHSGTTHQ  120
TSPDKESLSL RLRIGGGGSM GLVKEETQEV AEAWSGGCGF WWDKPTEKMK LRELKQFKTS  180
LEDLRAKVGM QLDDMSRRKL AARDFLGVNR NGSCG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G091400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203909.11e-158agamous-like MADS-box protein AGL62
TrEMBLM5W7691e-157M5W769_PRUPE; MADS-box protein 23
STRINGEMJ051081e-157(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-33AGAMOUS-like 62