PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G092700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21773.8 Da    PI: 8.4293
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G092700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-111151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        ien+s r+  f +R+  +lKK +E+S+LCd+ +  i+++++
  Prupe.7G092700.1.p 11 IENDSARKKRFRRRKGSLLKKVSEISTLCDVGAFAIVYAPD 51
                        9*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-14160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.9149IPR002100Transcription factor, MADS-box
CDDcd002661.98E-15285No hitNo description
PRINTSPR004048.4E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21393IPR002100Transcription factor, MADS-box
PfamPF003197.7E-121151IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MARTKVKLAW IENDSARKKR FRRRKGSLLK KVSEISTLCD VGAFAIVYAP DSDEPDVWPS  60
PSEVKELIAK FQSIPEAERS KKMTDHETYL KETTAKLEQQ LRKIKRQNYE MEMNDIMHDL  120
YKEEKMKEIS KIMERLEKDL PPADVSSQVG RDHENVAGMS NNNAAGRKIG GIRLMGFDIG  180
SSIIGDNGGG EE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G092700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202953.21e-127agamous-like MADS-box protein AGL80
TrEMBLA0A251N9551e-139A0A251N955_PRUPE; Uncharacterized protein
STRINGXP_008241195.11e-113(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3990322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-30AGAMOUS-like 80