PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G092900.1.p
Common NamePRUPE_ppa021813mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 356aa    MW: 39652.9 Da    PI: 8.2023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G092900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.5e-131151343
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        i n+  r+ tf kRr+ +lKK  EL +LCd++ ++i+++++
  Prupe.7G092900.1.p 11 IVNDAARKATFRKRRANLLKKLRELTILCDVNGLIIVYGPD 51
                        779999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-17160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.498149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21293IPR002100Transcription factor, MADS-box
CDDcd002661.61E-27285No hitNo description
PRINTSPR004041.6E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTRRKVKLAW IVNDAARKAT FRKRRANLLK KLRELTILCD VNGLIIVYGP DSDEPVVWPE  60
RPVVQELLAR FLSIPEFERW KKMTNQETYL KDSAAKIQEQ IRKIQKKNNE MEMNYIMHQI  120
LKNGKPLDAF HARELTDLVF FMKDKMKEIE KRIETKEMDP NVPPCAPPHN DEWNATESLF  180
NYLHKEKTKQ MENIVGASSS VRSDMGLPEY TYFGSSVNPA NGIGFPSVNF EGNYSYGGSD  240
LGLPKQIHNI AGSSSSVRHY GTDLGMPHVN YGGSSTGGSE MRHDILPHYY GDNIVGNTGW  300
GTRETNAGYG DRLGHLPQQL SVEGDKGSGL GLPAGLFGGN NGGSDAGLPY DVTKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAWIVNDAARKATFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G092900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424570.10.0MADS-box protein SOC1
TrEMBLA0A251N9540.0A0A251N954_PRUPE; Uncharacterized protein
STRINGXP_008241193.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-21AGAMOUS-like 80