PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G118500.1.p
Common NamePRUPE_ppa009356mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 297aa    MW: 31980.8 Da    PI: 4.8486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G118500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05269292123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         + C+ C++sF++   L++H +  H
  Prupe.7G118500.1.p 269 FNCQSCNRSFNSDGALQSHTKAkH 292
                         78*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.62E-5262291No hitNo description
Gene3DG3DSA:3.30.160.609.9E-4269292IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128742.7E-4269291No hitNo description
PROSITE profilePS5015712.133269296IPR007087Zinc finger, C2H2
PROSITE patternPS000280271292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA  60
EKFPQLPLDF FFGEKFELSH NWKNGSVHFT GYKSLSNTGD NSDSEEDVAL TVVDNGKPVI  120
SGKPKVSTED AKKAIKSEQK EASSDDDESD DEEVGAVQTK VKFGEGSSED EDESGDDDDD  180
DADSEDETDD SEEEDEETPK KADVSKKRPA ESTKSIANNK KAKFVTPEKT DSKKGSVHIA  240
TPHPAKQAGK KPATSDQSKQ QAPKSGGTFN CQSCNRSFNS DGALQSHTKA KHSAAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.205440.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G118500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202381.10.0histone deacetylase HDT1 isoform X1
TrEMBLM5W9V80.0M5W9V8_PRUPE; Uncharacterized protein
STRINGEMJ035800.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-28histone deacetylase 2C