PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G131400.5.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 316aa    MW: 34108 Da    PI: 4.6409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G131400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.42e-061641863355
                         .TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  33 apskKlsKaeiLekAveYIksLq 55 
                         + s+K +Ka++L +A+eY+k+Lq
  Prupe.7G131400.5.p 164 NMSEKTDKASMLDEAIEYLKQLQ 186
                         5689******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.7E-8163196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-8164203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-5166190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGDTYDHYYK NATCSSSPSA SVSPAAAAAP SQPPSTSDEI SLFLQQILLR SSSSLASVVA  60
HTGKAPQFLF SSSPSVAALP DHLSRPCHSM FLGDGITAVD SSAALLPAGN PNVSSSSFGA  120
SENETDEYDC ESEEGLEALV EEAAGKPGCG RSSSKRSRAA EVHNMSEKTD KASMLDEAIE  180
YLKQLQLQVQ MLSMRNGMSL HPMCLPGALQ PVQVSQMRMD LGEENRPLHL DMTGTLLMNQ  240
ESPTQNLFHF SNQCTDANQS YVPDMSNVVN SETSFGLESS MRAHLGPFQL PNSSENLNWE  300
RPLEFHFPLT HKYLI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.11520.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G131400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1812700.0GU181270.1 Prunus persica ALCATRAZ/SPATULA-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204562.20.0transcription factor SPATULA isoform X2
TrEMBLA0A251NDX10.0A0A251NDX1_PRUPE; Uncharacterized protein
STRINGXP_008241478.11e-178(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-31bHLH family protein
Publications ? help Back to Top
  1. Tani E, et al.
    The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development.
    Plant Physiol. Biochem., 2011. 49(6): p. 654-63
    [PMID:21324706]