PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G132300.1.p
Common NamePRUPE_ppa022938mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 267aa    MW: 29821.1 Da    PI: 10.0748
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G132300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08178218954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Prupe.7G132300.1.p 178 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 218
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-11171223No hitNo description
SuperFamilySSF474593.53E-14173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-14175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-6179218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDVDMLKSSS SSSSAGDDHH HHMDMMTMMM QMQMHKQQSS DHFCDSYHNS SNPTFPEIDF  60
TWGSNSNITN NIETISSLPI FHNPNAVSSQ HSQPTLINPA LPSSVSFMGN QIQEPLTPRL  120
IKTSPPPTSY EKRNSMAAMR EMIFRIAAMQ PIQIDPESVK PPKRRNVKIS KDPQSVAARH  180
RRERISEKIR ILQRLVPGGT KMDTASMLDE AIHYVKFLKK QVQTLERAGA DRPIGVGFQG  240
AGQLGNVNYS ALLRPSHLVG SMQMLR*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G132300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203958.10.0transcription factor HEC2
SwissprotQ9SND49e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLM5VUU40.0M5VUU4_PRUPE; Uncharacterized protein
STRINGEMJ051570.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]