PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G133600.1.p
Common NamePRUPE_ppa009274mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 300aa    MW: 33339.8 Da    PI: 4.8154
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G133600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1171.2e-36101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d++ +++isw+e+g++fvv+++ +fa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+ke
  Prupe.7G133600.1.p  10 FLTKTYQLVDDPSWDDVISWNESGTTFVVWKTVDFARDMLPKYFKHNNFSSFVRQLNTYGFRKTVPDQ---------WEFANDNFRRGQKE 91 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+ks
  Prupe.7G133600.1.p  92 LLSEIRRRKS 101
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-37393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-58699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.72E-34799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3705.1E-4148184IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PSWDDVISWN ESGTTFVVWK TVDFARDMLP KYFKHNNFSS  60
FVRQLNTYGF RKTVPDQWEF ANDNFRRGQK ELLSEIRRRK SVTAGPGKAT ASEKSGGPST  120
PSNSGEEMAS TSTSSPDSKN PGSVETAAMG QASDLSGENE KLKKENENLS SELAQTKKQC  180
DELVGFLMDY LKVGPDQINR IMRQGSYVPT RDEDEDEDDD LDFDRDENDA ADDDDDDGKQ  240
KEGLKLFGVW VKGNEKKKSK RTERDEKFGV GIGVGGTYAK KMKSAEFGAP MVKSGKVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-2659925129Heat shock factor protein 1
5d5v_B8e-2659925129Heat shock factor protein 1
5d5v_D8e-2659925129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.134040.0fruit
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G133600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202372.10.0heat stress transcription factor B-1
SwissprotP223351e-99HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLM5VRF10.0M5VRF1_PRUPE; Uncharacterized protein
STRINGEMJ035710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-84heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]