PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143100.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 254aa    MW: 29040.4 Da    PI: 10.1027
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-1213104199
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         ffk+ + +++  +  l +  kf+ e+  g     s  + l+ +sg +W+++l  r+ +g+++l kGW +F k   L+ g  +vF ++g+s+
  Prupe.7G143100.1.p  13 FFKIILDNSSRDR-KLGILEKFVMEYvdG----LSNPVYLKLPSGSEWKIEL--RRWDGEVWLVKGWPGFSKFYSLDLGHWLVFGYEGNSK 96 
                         6777744444444.499******999643....4456***************..999999****************************999 PP

                         E..EEEEE-S CS
                  B3  90 felvvkvfrk 99 
                         f  +v +f+ 
  Prupe.7G143100.1.p  97 F--RVCIFDG 104
                         9..9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-206104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-216104IPR015300DNA-binding pseudobarrel domain
CDDcd100174.05E-1511103No hitNo description
PROSITE profilePS5086311.37812105IPR003340B3 DNA binding domain
SMARTSM010192.3E-1113105IPR003340B3 DNA binding domain
PfamPF023622.4E-913104IPR003340B3 DNA binding domain
PROSITE profilePS508638.36179254IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-5188254IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-5191254IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MACPTFSPTT PHFFKIILDN SSRDRKLGIL EKFVMEYVDG LSNPVYLKLP SGSEWKIELR  60
RWDGEVWLVK GWPGFSKFYS LDLGHWLVFG YEGNSKFRVC IFDGNSDENS VEMFDFPPCQ  120
RKTREKSTLS CPWPHKKCRR VQVVKQKSTP TYKMGRHDFL TKKGGGGTSG NRTGKATALD  180
RANALKSQNP SSFIWLPSKF HKLHPINHSC EVILQVLNGR TWSVDLNCGF NGRIWPAKCQ  240
VETQARICGG WRAF
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951045.12e-78B3 domain-containing transcription factor VRN1-like
TrEMBLA0A251NBG10.0A0A251NBG1_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ046371e-170(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein