PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143400.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 214aa    MW: 24003.2 Da    PI: 7.5978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.6e-1329116899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                           +l+ g l +pk  + e+g   +   ++ le ++g +W vkl  r + g+++l+kGW eF+k   Lk g  + F + g+ s f  +v++f
  Prupe.7G143400.1.p  29 QQALQDGKLKIPKMLVMEYGDLMAD--KIFLEVPDGAVWPVKL-TRPCNGEIWLQKGWPEFAKFYSLKHGCLLFFNYGGEhSHF--RVRIF 114
                         45667788***********766444..7***************.5888888**************************9976777..99988 PP

                         -S CS
                  B3  98 rk 99 
                          +
  Prupe.7G143400.1.p 115 MR 116
                         65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1716115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-1817116IPR015300DNA-binding pseudobarrel domain
CDDcd100177.31E-1721114No hitNo description
PROSITE profilePS5086311.82922117IPR003340B3 DNA binding domain
SMARTSM010199.3E-923117IPR003340B3 DNA binding domain
PfamPF023624.3E-1130116IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSSRSRREGK GPAFQLSTPF PSFLKIVVQQ ALQDGKLKIP KMLVMEYGDL MADKIFLEVP  60
DGAVWPVKLT RPCNGEIWLQ KGWPEFAKFY SLKHGCLLFF NYGGEHSHFR VRIFMRNTLE  120
MNYFSSSTDD EAEGNSNPSS ETEGQGNKHD REKRTHGADH GGKSTASEAP LRTFAKTELE  180
DLAYSKALSF KSNNPFFCDE NAAIILINSP DLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424412.11e-160B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLA0A251NDG61e-159A0A251NDG6_PRUPE; Uncharacterized protein
STRINGEMJ056741e-116(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-20B3 family protein