PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 341aa    MW: 38883.6 Da    PI: 10.1214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1425113599
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++p+ +++   l++p+kf+ ++g +   s  + l+ +sg +W+++l  r+ +g  ++ kGW+eF +   L+   ++vF+++g+s+f  +v 
  Prupe.7G143700.1.p  25 MIPKGASRGIKLRIPNKFLMKCGDD--LSNPVFLNVPSGSKWKMEL--RRWDGDAWFDKGWSEFFEFYSLDNCHSLVFRYEGNSKF--NVC 109
                         566677777889**********988..6667***************..88888899**************************9999..999 PP

                         EE-S CS
                  B3  96 vfrk 99 
                         +f++
  Prupe.7G143700.1.p 110 IFDQ 113
                         9987 PP
2B348.81.3e-15230313388
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                          v + s +     ++lp +f++eh ++ +     +l  +  r W vkl +++++ r+ +++GW  F ++n+L+ gD++vF+l+++ +
  Prupe.7G143700.1.p 230 MVSMGSTNIDGYHMSLPAEFVKEHFNQVHD--NAILCVSGERAWPVKLGHWGRG-RIRFQSGWGTFLRDNHLEIGDVCVFELISNiK 313
                         55566666677779**********655444..577888899*******888885.899***********************997533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2215114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-2015114IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-1420112No hitNo description
PROSITE profilePS5086312.18221114IPR003340B3 DNA binding domain
SMARTSM010196.4E-1022114IPR003340B3 DNA binding domain
PfamPF023621.7E-1225113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-23221321IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-23222322IPR015300DNA-binding pseudobarrel domain
CDDcd100174.34E-17227321No hitNo description
PROSITE profilePS5086312.534228324IPR003340B3 DNA binding domain
PfamPF023621.1E-13228313IPR003340B3 DNA binding domain
SMARTSM010191.1E-8229322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MTSLRREIDN PTKRFSSTTP YFFMMIPKGA SRGIKLRIPN KFLMKCGDDL SNPVFLNVPS  60
GSKWKMELRR WDGDAWFDKG WSEFFEFYSL DNCHSLVFRY EGNSKFNVCI FDQSFKQIDY  120
ALKMPKMKET NSDDSGDVTE ILDKSLPRPR KSREKSPLQC LRPHKKARTS SRAGKVDFYA  180
KRHGGGKSIT ARFPKRTEPI LGSPHPSTTS EKAIALQRAK AFKSDNPFFM VSMGSTNIDG  240
YHMSLPAEFV KEHFNQVHDN AILCVSGERA WPVKLGHWGR GRIRFQSGWG TFLRDNHLEI  300
GDVCVFELIS NIKPLFDVVF FHATEAPNCT LSPGKLLTNF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154PRKSREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424404.10.0B3 domain-containing protein Os03g0620500 isoform X1
RefseqXP_020424406.10.0B3 domain-containing protein LOC_Os12g40080 isoform X3
TrEMBLA0A251NBE80.0A0A251NBE8_PRUPE; Uncharacterized protein
STRINGEMJ032250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-39B3 family protein