PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G145700.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 217aa MW: 24471.5 Da PI: 5.3889

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G145700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	115.1	4.5e-36	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCa+Ck++rrkC + C +apyfpa++ ++f+n++k+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ q++ l+ Prupe.7G145700.1.p 13 ACASCKHQRRKCDETCEMAPYFPASRYSEFQNAQKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVHGCLGIIRGLNAQIQGLE 103 7**************************************************************************************** PP DUF260 92 aelallkee 100 el+ +k++ Prupe.7G145700.1.p 104 RELHIMKQH 112 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.678	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-33	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MENRDQVAAQ NYACASCKHQ RRKCDETCEM APYFPASRYS EFQNAQKIFG VSNIQKIMAM 60 AAPDQRQAAA ESILTEGNAR KNDPVHGCLG IIRGLNAQIQ GLERELHIMK QHLELCKEKE 120 ELDGKKNQSK EEDLQHDQSD GLNFPSPILP DLPSHVTAEM RKYEQGYNYW SILEDAEEEV 180 FDIRLIEPVL FESNLKGNAS SSGSGKSRLC KTLYFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	14	115	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	14	115	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G145700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007203165.2	1e-155	LOB domain-containing protein 9
TrEMBL	A0A251NEG9	1e-161	A0A251NEG9_PRUPE; Uncharacterized protein
STRING	XP_008241869.1	1e-139	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14432	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-28	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Prupe.7G145700.1.p