PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G181600.1.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 342aa MW: 39187.1 Da PI: 8.4889

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G181600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.3	5.6e-27	214	263	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Prupe.7G181600.1.p 214 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 263 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.327	198	283	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-22	215	263	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MDSSDCEPHL LRSLLVFKNT INQAFFFFFF LVGFLIELIR SLHVYRLDEG KENEVEREFV 60 LSASEPYVEL PADPLLRLMK FPVSQVHEGH VNGCWVCIFA FQANFPPNFT CIPSILSVSR 120 NRKLKSIPAL ANDLQMIFEL SNKKPLQRSG EETCQGSNDN NHQLIRSSPI LDLDLNSLPC 180 PVPMSESSED QEIGRSLPGI MEKKKKRAPS EHVANIALSD LAKYFDLPIV EASRNLNVGL 240 TVLKKKCREF GIPRWPHRKI KSLDGLIRDL QEETEIQQQE NQAAALAVAK RQRMLENEKE 300 SIERKPFLEM KTETKKFRQD VFKRRHRARL LRSQGLSNSD N*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MDSSDCEPHL LRSLLVFKNT INQAFFFFFF LVGFLIELIR SLHVYRLDEG KENEVEREFV  60
LSASEPYVEL PADPLLRLMK FPVSQVHEGH VNGCWVCIFA FQANFPPNFT CIPSILSVSR  120
NRKLKSIPAL ANDLQMIFEL SNKKPLQRSG EETCQGSNDN NHQLIRSSPI LDLDLNSLPC  180
PVPMSESSED QEIGRSLPGI MEKKKKRAPS EHVANIALSD LAKYFDLPIV EASRNLNVGL  240
TVLKKKCREF GIPRWPHRKI KSLDGLIRDL QEETEIQQQE NQAAALAVAK RQRMLENEKE  300
SIERKPFLEM KTETKKFRQD VFKRRHRARL LRSQGLSNSD N*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G181600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202579.2	0.0	protein RKD5
Swissprot	O81791	8e-88	RKD5_ARATH; Protein RKD5
TrEMBL	A0A251ND71	0.0	A0A251ND71_PRUPE; Uncharacterized protein
STRING	XP_008241948.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-78	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Prupe.7G181600.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]