PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G181600.2.p

Common Name

PRUPE_ppa011563mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 207aa MW: 23685.1 Da PI: 10.0052

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G181600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.4	2.5e-27	79	128	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Prupe.7G181600.2.p 79 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 128 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.327	63	148	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-22	80	128	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MIFELSNKKP LQRSGEETCQ GSNDNNHQLI RSSPILDLDL NSLPCPVPMS ESSEDQEIGR 60 SLPGIMEKKK KRAPSEHVAN IALSDLAKYF DLPIVEASRN LNVGLTVLKK KCREFGIPRW 120 PHRKIKSLDG LIRDLQEETE IQQQENQAAA LAVAKRQRML ENEKESIERK PFLEMKTETK 180 KFRQDVFKRR HRARLLRSQG LSNSDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G181600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202579.2	1e-147	protein RKD5
Swissprot	O81791	6e-60	RKD5_ARATH; Protein RKD5
TrEMBL	M5W3E6	1e-149	M5W3E6_PRUPE; Uncharacterized protein
STRING	EMJ03778	1e-149	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-51	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Prupe.7G181600.2.p
Entrez Gene	18769336

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]