PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G181600.4.p

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 264aa MW: 30039.5 Da PI: 9.9583

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G181600.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.8	3.7e-27	136	185	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+dl+kyF+lpi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Prupe.7G181600.4.p 136 ANIALSDLAKYFDLPIVEASRNLNVGLTVLKKKCREFGIPRWPHRKIKSL 185 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.327	120	205	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-22	137	185	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MKFPVSQVHE GHVNGCWVCI FAFQANFPPN FTCIPSILSV SRNRKLKSIP ALANDLQMIF 60 ELSNKKPLQR SGEETCQGSN DNNHQLIRSS PILDLDLNSL PCPVPMSESS EDQEIGRSLP 120 GIMEKKKKRA PSEHVANIAL SDLAKYFDLP IVEASRNLNV GLTVLKKKCR EFGIPRWPHR 180 KIKSLDGLIR DLQEETEIQQ QENQAAALAV AKRQRMLENE KESIERKPFL EMKTETKKFR 240 QDVFKRRHRA RLLRSQGLSN SDN*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G181600.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202579.2	0.0	protein RKD5
Swissprot	O81791	6e-76	RKD5_ARATH; Protein RKD5
TrEMBL	A0A251ND73	0.0	A0A251ND73_PRUPE; Uncharacterized protein
TrEMBL	A0A251NF75	0.0	A0A251NF75_PRUPE; Uncharacterized protein
STRING	XP_009344678.1	1e-147	(Pyrus x bretschneideri)
STRING	EMJ03778	1e-148	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	8e-67	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Prupe.7G181600.4.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]