PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G201700.1.p
Common NamePRUPE_ppa024074mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 299aa    MW: 33519.1 Da    PI: 5.0158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G201700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W+++Ed+ l+++++ +G g W+  + + g++R++k+c++rw++yl
  Prupe.7G201700.1.p 14 KGAWSAWEDKALANYINTHGEGKWRDLPPRAGLNRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding55.71.2e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ ++eE+el+v+++k+lG++ W++Ia +++ gRt++++k++w++ 
  Prupe.7G201700.1.p  67 RGNISPEEEELIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                         7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.041961IPR017930Myb domain
SuperFamilySSF466894.59E-2812108IPR009057Homeodomain-like
SMARTSM007175.6E-121363IPR001005SANT/Myb domain
PfamPF002499.3E-151461IPR001005SANT/Myb domain
CDDcd001672.02E-81661No hitNo description
PROSITE profilePS5129425.85362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2565115IPR009057Homeodomain-like
SMARTSM007171.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
CDDcd001672.11E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRKPCCDKE GLNKGAWSAW EDKALANYIN THGEGKWRDL PPRAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SPEEEELIVR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRSEQGS  120
DKAHQDQRSS STSSKDDTKK SNNPASKSSV QVIRTKAFKC RKVAIPSHLD GHDQMLERSN  180
VAPVSDSESP CSSAAQEHDS SFGFLRDFDI NDMLIPDVLS SDFQQAQIND CDQDMLECGI  240
TKIEDLLMGE ARLGEWRAGD EDQDDPLQPN DDDHGDVDGF NALSSFLNSV DNDQWIIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G201700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203132.10.0transcription repressor MYB6
TrEMBLM5VTE10.0M5VTE1_PRUPE; Uncharacterized protein
STRINGEMJ043310.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1893346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-60MYB family protein