PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G201900.1.p
Common NamePRUPE_ppa025811mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 264aa    MW: 30063.7 Da    PI: 7.5433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT++Ede+l ++ + +G+g W+  +++ g++R++ +c+ rw +yl
  Prupe.7G201900.1.p 14 KGAWTAQEDEILSNYMNTYGKGKWRDLPQRAGLKRCGRSCRMRWVNYL 61
                        79********************************************97 PP
2Myb_DNA-binding23.11.7e-0767103146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ +++E++l+v+++k+lG++        ++ gRt+ ++k++w++
  Prupe.7G201900.1.p  67 RGNISADEEDLIVRLHKLLGNR--------IP-GRTDTEIKNYWNT 103
                         7899****************99........**.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.357965IPR017930Myb domain
SuperFamilySSF466893.91E-2212101IPR009057Homeodomain-like
SMARTSM007171.0E-101363IPR001005SANT/Myb domain
PfamPF002498.0E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201568IPR009057Homeodomain-like
CDDcd001672.46E-71661No hitNo description
PROSITE profilePS5129411.0966109IPR017930Myb domain
SMARTSM007176.7E-566107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1269108IPR009057Homeodomain-like
CDDcd001676.65E-571105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGRRPCYEKD GINKGAWTAQ EDEILSNYMN TYGKGKWRDL PQRAGLKRCG RSCRMRWVNY  60
LRPGIKRGNI SADEEDLIVR LHKLLGNRIP GRTDTEIKNY WNTRLSKRSS SDQELLEHHK  120
PSVNPKNQHN EKGLIPSDQS DNAKAIRPKP FKCTKVDVGI PSHLQDDQDH QIMVDTTNNN  180
NFVSSSVPAG SSSNDLFILD LLNSTEFQQP QMKEWQLAMV ENYWRGSPII AAVDPFEPNI  240
DGEVAFNALS SFLNSEDSQY WIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-181210825127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G201900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423442.10.0transcription factor MYB6 isoform X1
TrEMBLA0A251NE650.0A0A251NE65_PRUPE; Uncharacterized protein
STRINGEMJ044980.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3991522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.14e-49myb domain protein 111