PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G207100.11.p
Common NamePRUPE_ppa001043mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 936aa    MW: 103269 Da    PI: 5.605
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G207100.11.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05552573426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          + Cr+f r G C+ Gd+CkF+H+
  Prupe.7G207100.11.p 552 AYCRHFVR-GRCHEGDKCKFSHD 573
                          67******.*************7 PP
2zf-CCCH24.64.4e-08607627525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                          +C++f ++G+C++GdrC F+H
  Prupe.7G207100.11.p 607 PCNNFKENGFCSRGDRCMFSH 627
                          7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.084548575IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6549573IPR000571Zinc finger, CCCH-type
SMARTSM003560.0051549574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.46577604IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001577602IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-4577603IPR000571Zinc finger, CCCH-type
SMARTSM003560.015605629IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5606630IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5607627IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5607628IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244607630IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 936 aa     Download sequence    Send to blast
MEEANIETEK PSQTLIAFPP HCRRHLKSGT YRSLVRILSH CYEESQHSAA DQNVPQELNQ  60
DNGSIEPVQA TEKEVLENVE LVGPGSMGPK NSAAEEVRVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDFQDLDF DPEQILMDEP ERMAKGNEDD THRPSATSLD  180
QNQSGSDKVA LLTNQEEHDA TVISESSVQM VSGTLYSSLH TIAMGESSNQ RESNEQNSLL  240
MTNRLDVEPI IQQKAMELET YVSSEGAKES FIPITEVGAI KEPENFSQKV PDSFDFSLNK  300
DMVAEASKPA EYGKDKSSSR KNNDLEVEHE MQQKNKELEE IVCTRTAINS PSHMSEDVEE  360
GEISSDDGMD DRSNDVLLHD TVVLEEKKVP EVQIFKDALD RKEHSCNVAN DKDFGSNSFL  420
VDMVDEGKID RGAELRESSR TEMICRPGVV EGKNVKALKV DDSNPLLEGG RIEMQDNGVR  480
MGIGCPAAGN HGITSEEKWD DGACNKRKRG PPTKEKKEKK KAKERKKRAE KNRELGVKRL  540
KLHPIQKAKT VAYCRHFVRG RCHEGDKCKF SHDTVPLTKS KPCVHFARQS CMKGDDCQYD  600
HELSKYPCNN FKENGFCSRG DRCMFSHKMP SNEDSATAAC KPELKPPMVL NNSRSQQVNT  660
GGASQQNVHA LAYSTGIHSR NNTKQNVTQT VLKQPEPANK GISFPSIPNS SLVHSSMSKQ  720
GLAPDRNNGA KAGNQIDQSP LSSVQNSTEI LKRTPPVTTP KGINFLSFGK ASPDDARGKN  780
QVSRQTSPCV SETVKNLNGM LKANQSAVLQ GTHFNPFGKS SVASSSSEKP VSLPSFWNNG  840
SNIDSCESQT TADKPQNSSG ISLRLPPSPL TSGQSSDRIA SRFCKETANS FQRGLFSTLA  900
FAAKYKTQNM NQSIGSTGAQ VDKETRNSSI SDRIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1506527RKRGPPTKEKKEKKKAKERKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G207100.11.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424016.10.0uncharacterized protein LOC18770156 isoform X3
TrEMBLA0A251NEG50.0A0A251NEG5_PRUPE; Uncharacterized protein
STRINGEMJ044360.0(Prunus persica)