PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G208700.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 243aa    MW: 27167.2 Da    PI: 4.9249
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G208700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.33.4e-35131121100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +Ca+Ck +rrkC + C +apyfpa++ ++f+n+hk+FG+sn++k+++ + ++++++a++s++ e++ar +dPv+G++g+i+ l++q++ l+
  Prupe.7G208700.1.p  13 PCASCKQQRRKCDETCEMAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQKQAAAESILTEGNARKNDPVNGCLGIIRGLNSQIQGLE 103
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          el+ +k++
  Prupe.7G208700.1.p 104 RELHIMKQH 112
                         ****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.97112113IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3313110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENRDQGAAQ NHPCASCKQQ RRKCDETCEM APYFPASRYS EFQNAHKIFG VSNIQKIMAM  60
AAPDQKQAAA ESILTEGNAR KNDPVNGCLG IIRGLNSQIQ GLERELHIMK QHLELCKEKE  120
ELDGKKNQSK EEDLQHDQSD DLNSPILPDL PSHVITEMRK YEQGYNYWST LEDAEEKVFD  180
IRIIEPVLFE SNLKGNASSS APGETRDGKE KEEGEIASAA ASKAKEKQPS ESLREKTTED  240
KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-231310611104LOB family transfactor Ramosa2.1
5ly0_B1e-231310611104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G208700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021804831.11e-157LOB domain-containing protein 22-like
TrEMBLA0A251NEJ81e-180A0A251NEJ8_PRUPE; Uncharacterized protein
STRINGXP_008242392.11e-143(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144321117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-30LOB domain-containing protein 22