PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G223800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 258aa    MW: 29510.6 Da    PI: 8.4672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G223800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.6e-12131237198
                         EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                         f+k+lt+sdv +  +rl++ k+ +e +       g + +e++++t +d  g ++ + ++++ ++  +vlt+GWk F+++ gL    Dfv++
  Prupe.7G223800.1.p 131 FEKQLTRSDVKEDqCRLSMNKEDVEYNimpllrnGDNFNEGIDVTTYDMAGTEYPMVFKIWATK-IHVLTGGWKTFCNDLGLVeNQDFVTL 220
                         99*********988**********877******97788899*****************999997.689**************857899987 PP

                         EE-SS.SEE..EEEEE- CS
                  B3  83 kldgr.sefelvvkvfr 98 
                          + ++ +++ l++ +++
  Prupe.7G223800.1.p 221 WVFRHvDNGGLCFAIHS 237
                         76555566666777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-15129225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-16130235IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-4131239IPR003340B3 DNA binding domain
PfamPF023623.2E-9131238IPR003340B3 DNA binding domain
CDDcd100172.62E-16131237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MTSQEDREEP GCADGEMTNG TEGAYLLLFL KHTILNPETA RDLEHMKRKI LSGIELNSPS  60
RSKRKALRIQ EPEAPRARES TNGAARGRSS PRELQFQQQE RGGLFYGNYA PPDLPPIPSL  120
QNLIQDCSKP FEKQLTRSDV KEDQCRLSMN KEDVEYNIMP LLRNGDNFNE GIDVTTYDMA  180
GTEYPMVFKI WATKIHVLTG GWKTFCNDLG LVENQDFVTL WVFRHVDNGG LCFAIHSRRL  240
PVFKPIKKRR PIRQKYH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G223800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204526.21e-113uncharacterized protein LOC18771780
TrEMBLA0A251NFE70.0A0A251NFE7_PRUPE; Uncharacterized protein
STRINGEMJ043070.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-30B3 family protein