PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G223900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 259aa    MW: 29602.8 Da    PI: 9.6845
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G223900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-13132238198
                         EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS
                  B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 
                         f+k+l +sdv  + +rl++ k+ +e++       g++ +e++ +t +d +g+++ + ++++ ++  +vlt+GWk F+++ gL    Dfv++
  Prupe.7G223900.1.p 132 FEKQLARSDVKDNqCRLSMNKEDVENNimpllrnGENLNEGINVTTYDMTGNEYPMVFKIWATK-VHVLTGGWKTFCNDLGLVeNQDFVTL 221
                         99********9988**********999******9666679999***************999997.789**************857899998 PP

                         EE-SS.SEE..EEEEE- CS
                  B3  83 kldgr.sefelvvkvfr 98 
                            ++ +++ l++ +++
  Prupe.7G223900.1.p 222 WIFRHvDKGGLCFAIHS 238
                         76655577767777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-15130226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-16131226IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-16132238No hitNo description
SMARTSM010190.0018132240IPR003340B3 DNA binding domain
PfamPF023621.3E-9132239IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MASREDREDP GYGDGKMTSS TEEGAYLLLH LKHTILNPET ARNLDHMKSK ILSGIKLKSP  60
SGSKRKALRI QEPEAPQARE ATNGAARRRS LPRELQFQQQ ERRGLFYGNY TPPDLPPIPS  120
LQNLIQDCSK PFEKQLARSD VKDNQCRLSM NKEDVENNIM PLLRNGENLN EGINVTTYDM  180
TGNEYPMVFK IWATKVHVLT GGWKTFCNDL GLVENQDFVT LWIFRHVDKG GLCFAIHSRR  240
LPVFEPIKKK RPIRQNYH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G223900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007204526.21e-108uncharacterized protein LOC18771780
TrEMBLA0A251NFC20.0A0A251NFC2_PRUPE; Uncharacterized protein
STRINGXP_008242629.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-30B3 family protein