PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G245200.2.p

Common Name

PRUPE_ppa012028mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

YABBY

Protein Properties

Length: 137aa MW: 15614.4 Da PI: 9.7632

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G245200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	139.4	4.1e-43	13	109	76	170
YABBY 76 kveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfP 164 + ++ n++ ++ + es s+s+ ++k+ + + ++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP Prupe.7G245200.2.p 13 QAQNYNYNAQNYRIESGSSSKCNKKIatRDPTADHVTEERGVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 103 44555555544444454555555555325556677888888************************************************ PP YABBY 165 kihfgl 170 +ihfgl Prupe.7G245200.2.p 104 HIHFGL 109 **97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-40	17	109	IPR006780	YABBY protein
SuperFamily	SSF47095	3.53E-8	55	102	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.6E-5	57	103	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MAAAFQSLWP DVQAQNYNYN AQNYRIESGS SSKCNKKIAT RDPTADHVTE ERGVNRPPEK 60 RQRVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LETNNQPKLD 120 NDSEKHLISR AALLNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G245200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202630.1	8e-99	axial regulator YABBY 5
Swissprot	Q8GW46	2e-50	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A251NG97	1e-97	A0A251NG97_PRUPE; Uncharacterized protein
TrEMBL	M5VR92	2e-97	M5VR92_PRUPE; Uncharacterized protein
STRING	EMJ03829	3e-98	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-49	YABBY family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G245200.2.p
Entrez Gene	18770811

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]