PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G261000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 401aa    MW: 45359.2 Da    PI: 7.9099
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G261000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.77e-0972120155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++kGV   + +g W A+I+       +  r++lg+f ++ +Aa  ++ a++kl+g
  Prupe.7G261000.1.p  72 KKFKGVVEQP-NGHWGAQIYA------NhERVWLGTFNSEIDAAMGYDSAALKLRG 120
                         589***8666.8******999......44**********99*************98 PP
2B379.34.1e-25201292183
                         EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         f+k+ltpsdv+k++rlv+p k+a ++         g+++ +s +lt++d+  rsW+++++++k+s+++v+tkGW++Fv+ ++L+++D++ F
  Prupe.7G261000.1.p 201 FQKELTPSDVGKLNRLVIPSKYACTYfptvseairGKVESCSSQLTFYDRMMRSWTFRFCFWKSSKSFVFTKGWSRFVRTHDLQAKDTIRF 291
                         99*********************999*********9999**************************************************99 PP

                         E CS
                  B3  83 k 83 
                          
  Prupe.7G261000.1.p 292 L 292
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-2272130No hitNo description
SMARTSM003801.2E-1873134IPR001471AP2/ERF domain
PROSITE profilePS5103217.35973128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-1773128IPR001471AP2/ERF domain
PfamPF008471.9E-473120IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1473129IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.108.6E-30199299IPR015300DNA-binding pseudobarrel domain
CDDcd100174.56E-23199291No hitNo description
SuperFamilySSF1019368.24E-25199294IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997201319IPR003340B3 DNA binding domain
PfamPF023626.9E-22201292IPR003340B3 DNA binding domain
SMARTSM010195.4E-15201302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MTLSKLKKFP YSDYLLLPFI CSRLINKKHI MEEGMSSTVS NSGMKMNTVG GVSDSSLAAN  60
DSTDGACKRV SKKFKGVVEQ PNGHWGAQIY ANHERVWLGT FNSEIDAAMG YDSAALKLRG  120
RDCHRNFPWT ETTFEEQHFQ NQYATEVVLI MIKDGSYQTK FSEFRRSRSG IESVGADVQF  180
GSLARVQSSN GKGELLEDFL FQKELTPSDV GKLNRLVIPS KYACTYFPTV SEAIRGKVES  240
CSSQLTFYDR MMRSWTFRFC FWKSSKSFVF TKGWSRFVRT HDLQAKDTIR FLQCQYKQSG  300
DGNYKEQPHS FCMIQVKKDG GRSNDVSCLV ENNANSYQYD GVRNDGGMMD SDYKFKVEAV  360
SPNIHEDEDG ILLADEKKCF RLFGVEISDV DVLSSHSIIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2120029113100DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G261000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425026.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X1
TrEMBLA0A251NH770.0A0A251NH77_PRUPE; Uncharacterized protein
STRINGEMJ046420.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-80RAV family protein