PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G261000.4.p
Common NamePRUPE_ppa021899mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 371aa    MW: 41765.8 Da    PI: 6.7066
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G261000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.2e-094290155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +++kGV   + +g W A+I+       +  r++lg+f ++ +Aa  ++ a++kl+g
  Prupe.7G261000.4.p 42 KKFKGVVEQP-NGHWGAQIYA------NhERVWLGTFNSEIDAAMGYDSAALKLRG 90
                        589***8666.8******999......44**********99*************98 PP
2B379.43.6e-25171262183
                         EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         f+k+ltpsdv+k++rlv+p k+a ++         g+++ +s +lt++d+  rsW+++++++k+s+++v+tkGW++Fv+ ++L+++D++ F
  Prupe.7G261000.4.p 171 FQKELTPSDVGKLNRLVIPSKYACTYfptvseairGKVESCSSQLTFYDRMMRSWTFRFCFWKSSKSFVFTKGWSRFVRTHDLQAKDTIRF 261
                         99*********************999*********9999**************************************************99 PP

                         E CS
                  B3  83 k 83 
                          
  Prupe.7G261000.4.p 262 L 262
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.43E-2342100No hitNo description
SMARTSM003801.2E-1843104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-174398IPR001471AP2/ERF domain
PROSITE profilePS5103217.3594398IPR001471AP2/ERF domain
PfamPF008471.7E-44390IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-144399IPR016177DNA-binding domain
CDDcd100171.94E-23169261No hitNo description
SuperFamilySSF1019366.93E-25169264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-30169269IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.997171289IPR003340B3 DNA binding domain
SMARTSM010195.4E-15171272IPR003340B3 DNA binding domain
PfamPF023626.0E-22171262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEEGMSSTVS NSGMKMNTVG GVSDSSLAAN DSTDGACKRV SKKFKGVVEQ PNGHWGAQIY  60
ANHERVWLGT FNSEIDAAMG YDSAALKLRG RDCHRNFPWT ETTFEEQHFQ NQYATEVVLI  120
MIKDGSYQTK FSEFRRSRSG IESVGADVQF GSLARVQSSN GKGELLEDFL FQKELTPSDV  180
GKLNRLVIPS KYACTYFPTV SEAIRGKVES CSSQLTFYDR MMRSWTFRFC FWKSSKSFVF  240
TKGWSRFVRT HDLQAKDTIR FLQCQYKQSG DGNYKEQPHS FCMIQVKKDG GRSNDVSCLV  300
ENNANSYQYD GVRNDGGMMD SDYKFKVEAV SPNIHEDEDG ILLADEKKCF RLFGVEISDV  360
DVLSSHSIIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2217026113100DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G261000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203443.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X2
RefseqXP_020425026.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680 isoform X1
TrEMBLA0A251NH770.0A0A251NH77_PRUPE; Uncharacterized protein
TrEMBLM5VTE80.0M5VTE8_PRUPE; Uncharacterized protein
STRINGEMJ046420.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-80RAV family protein