PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G002600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 230aa    MW: 25006 Da    PI: 10.4146
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G002600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.25.5e-62551902137
              Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                         ++k+kaal++++v+ptf++l+sgnl+++r+G ++l++++a++erkydWek q+falsatev++l++l++k+sce+fhdp++k+sn+G+vrk
  Prupe.8G002600.1.p  55 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGVVMLKFTPAIGERKYDWEKNQVFALSATEVGSLISLGPKDSCELFHDPSMKSSNAGQVRK 145
                         9****************************************************************************************** PP

              Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                         +l+++ ++dGsG++v+l+v n+l+k++e+f vPv+ aefav++++
  Prupe.8G002600.1.p 146 SLSIKCHADGSGYLVSLAVVNNLLKTKENFIVPVTAAEFAVMKTA 190
                         *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.7E-7242209IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544478.63E-6348210IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.2E-5855189IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMKVLRLLSS SRNQFPTRGA LSMHAYTHSS SFSTASKSFS VKGTSAHNVF ASFNIFKGKA  60
ALSLNPVLPT FTKLESGNLV VSRRGVVMLK FTPAIGERKY DWEKNQVFAL SATEVGSLIS  120
LGPKDSCELF HDPSMKSSNA GQVRKSLSIK CHADGSGYLV SLAVVNNLLK TKENFIVPVT  180
AAEFAVMKTA CSFVLPHIMG WDRLMSNMPT VVGGQQSKVV PQLLDEWDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-834920811170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-834920811170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-834920811170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-834920811170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G002600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425166.11e-170single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
SwissprotD9J0342e-90WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A251MQG41e-168A0A251MQG4_PRUPE; Uncharacterized protein
STRINGXP_008237819.11e-160(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-87WHIRLY 2