PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G002600.3.p
Common NamePRUPE_ppa011529mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 208aa    MW: 22531 Da    PI: 9.9344
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G002600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly199.64.1e-62331682137
              Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                         ++k+kaal++++v+ptf++l+sgnl+++r+G ++l++++a++erkydWek q+falsatev++l++l++k+sce+fhdp++k+sn+G+vrk
  Prupe.8G002600.3.p  33 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGVVMLKFTPAIGERKYDWEKNQVFALSATEVGSLISLGPKDSCELFHDPSMKSSNAGQVRK 123
                         9****************************************************************************************** PP

              Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                         +l+++ ++dGsG++v+l+v n+l+k++e+f vPv+ aefav++++
  Prupe.8G002600.3.p 124 SLSIKCHADGSGYLVSLAVVNNLLKTKENFIVPVTAAEFAVMKTA 168
                         *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.8E-7220187IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544476.04E-6326188IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.2E-5833167IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MHAYTHSSSF STASKSFSVK GTSAHNVFAS FNIFKGKAAL SLNPVLPTFT KLESGNLVVS  60
RRGVVMLKFT PAIGERKYDW EKNQVFALSA TEVGSLISLG PKDSCELFHD PSMKSSNAGQ  120
VRKSLSIKCH ADGSGYLVSL AVVNNLLKTK ENFIVPVTAA EFAVMKTACS FVLPHIMGWD  180
RLMSNMPTVV GGQQSKVVPQ LLDEWDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A9e-842718611170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B9e-842718611170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C9e-842718611170Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D9e-842718611170Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G002600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020425166.11e-153single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
SwissprotD9J0344e-88WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A251MQG41e-152A0A251MQG4_PRUPE; Uncharacterized protein
STRINGEMJ017251e-152(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-87WHIRLY 2