PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G016200.1.p
Common NamePRUPE_ppa003310mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 547aa    MW: 60817.4 Da    PI: 4.8345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G016200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.61.3e-1381775462374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL++cA a+s+g+ + a++++++l++++s +gdp qR+aay++e+Laar+a+s++ ly++l+++e +   ss +laa+++++ev+P++k
  Prupe.8G016200.1.p 177 KQLLYNCAGALSEGNIKGASTMISELRQMVSIQGDPAQRIAAYMVEGLAARVASSGKFLYRSLKCKEPP---SSYRLAAMQVLFEVCPCFK 264
                         589*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aI ea + e++vHiiDfdi+qG Q+++L+q+La+R ++pp+lR+Tgv++pes+      l+ +g+rL+k+Ae+l+vpfef++ 
  Prupe.8G016200.1.p 265 FGFMAANGAIIEACKDEKKVHIIDFDINQGNQYITLIQTLAKRLGKPPHLRLTGVDDPESVqrPVGGLNIIGQRLEKLAEALKVPFEFQA- 354
                         ***********************************************************99888899***********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         va+r++ +++++L+++pgEal Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+
  Prupe.8G016200.1.p 355 VASRTSIVNTSMLDCRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDVNTNTTPFFPRFIEAYSYYSAVFDSLD 445
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a lpres++ri+vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l+r++ ++ y+v+ee g+l +gW+
  Prupe.8G016200.1.p 446 AALPRESQDRINVERQCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSVTDSIRELIRQYCDR-YKVKEEAGALHFGWE 535
                         *************************************************************************66.*************** PP

                GRAS 364 drpLvsvSaWr 374
                         +++L+++SaWr
  Prupe.8G016200.1.p 536 NKSLIVASAWR 546
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.869150527IPR005202Transcription factor GRAS
PfamPF035144.3E-136177546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSLVRPAELS ATSYRNPKLY SPKGSNDSST LSTQTFSSDK SKTLYVADPY SAESYEYFLD  60
SPVEGIANPS SSGISGNSTN PQDYFESQSP DADSFDEAKM RLKLQELERA LLEDNDDEND  120
EEINCSSQSM EVDGEWTDPI QNELLHDSPK ESSSSESNVS SISSNKEISQ ASPRTPKQLL  180
YNCAGALSEG NIKGASTMIS ELRQMVSIQG DPAQRIAAYM VEGLAARVAS SGKFLYRSLK  240
CKEPPSSYRL AAMQVLFEVC PCFKFGFMAA NGAIIEACKD EKKVHIIDFD INQGNQYITL  300
IQTLAKRLGK PPHLRLTGVD DPESVQRPVG GLNIIGQRLE KLAEALKVPF EFQAVASRTS  360
IVNTSMLDCR PGEALLVNFA FQLHHMPDES VSTVNQRDQL LRMVKSLRPK LVTVVEQDVN  420
TNTTPFFPRF IEAYSYYSAV FDSLDAALPR ESQDRINVER QCLARDIVNI VACEGEERIE  480
RYEVAGKWRA RMTMAGFTSC PMSTSVTDSI RELIRQYCDR YKVKEEAGAL HFGWENKSLI  540
VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6518254524377Protein SCARECROW
5b3h_D1e-6518254524377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.46970.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G016200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426257.10.0scarecrow-like protein 1 isoform X2
RefseqXP_020426258.10.0scarecrow-like protein 1 isoform X2
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A251MUR10.0A0A251MUR1_PRUPE; Uncharacterized protein
STRINGEMJ029230.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]